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To summarize: It appears that one of the central claims is
that when we take two samples of distinguishable particles
and mix them, the entropy is additive. This claim cannot
withstand even the slightest scrutiny.
This is not a big deal. The energy is not quite extensive,
because of surface-tension and surface-reconstruction effects,
and this has not caused the world to end. Discovering that
the entropy is not quite extensive will also not cause the
world to end. For large systems, the correction terms will
be insignificant ... but they exist in principle and they
are significant for small systems.