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There are many cases where the choice of which variable to put on
which axis has to do with ease of interpretation of the data. In
meteorology, when plotting the state of the atmosphere at a
particular time, it makes most sense to plot altitude (or pressure)
on the vertical axis and temperature and dew point on the horizontal.
This gives one a mental "snapshot" of the air above. Sticking with
the dependent-independent rule would give the same information but
would be less intuitive and harder to interpret.